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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEC62, SEC62 homolog (S. cerevisiae)
Sequence ID:NM_003262
Entrez Gene ID:7095
Ensembl ID:ENSG00000008952

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q26.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 169712201 - 169714250

NM_003262 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
167169684579169684645
68176169693395169693503
177282169694733169694838
283487169700494169700698
488580169700948169701040
581641169703592169703652
642761169706027169706146
7626539169710381169716158

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4706586Full LengthBC012035SEC62 homolog (S. cerevisiae)
3932691IncompleteBC003677SEC62 homolog (S. cerevisiae)
4475515IncompleteBC105971SEC62 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003253  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003262 NP_003253 Q99442 Sec62

Related Sequences

 
mRNAGenPeptSwissProt
U93239 AAB51391 Q99442
BC003677 AAH03677 A0JLN5
BC012035 AAH12035 Q99442
BC105971 AAI05972 Q3KR08
EU832386 ACE86871  
EU832302 ACE87559  
D87127 BAA13254 Q99442

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEC62 NP_003253 M.musculus Sec62 69276 Gene Info NP_081292 94
R.norvegicus Sec62 294912   NP_001029301 94
C.elegans C18E9.2 174429   NP_495908 44
A.gambiae AgaP_AGAP009788 1279201   XP_318883 42
D.melanogaster Trp1 34333   NP_477008 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)