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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. NFIA, Nuclear factor I/A
Sequence ID:NM_001134673
RefSeqGene ID:NG_011787
Entrez Gene ID:4774
Ensembl ID:ENSG00000162599

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p31.3-p31.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 61547979 - 61922041

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4270934Full LengthBC022264nuclear factor I/A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005586  

Protein Infomation

NM_001134673 NP_001128145 Q12857  
NM_001145511 NP_001138983    
NM_001145512 NP_001138984    
NM_005595 NP_005586   CTF_NFI

Related Sequences

U07809 AAA93124 Q12857
BC022264 AAH22264 Q12857
DQ893250 ABM84176  
DQ896579 ABM87578  
AB037860 BAA92677 Q12857
AK299289 BAG61305 B4DRJ3
AK299356 BAG61351 B4DRN9
AK299579 BAG61515 B4DS53
AL133665 CAH56387 Q659D5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens NFIA NP_001138984 R.norvegicus Nfia 25492   NP_037120 100
M.musculus Nfia 18027 Gene Info NP_035035 99
D.melanogaster NfI 43782   NP_995592 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)