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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ABCA6, ATP-binding cassette, sub-family A (ABC1), member 6
Sequence ID:NM_080284
NM_172346
Entrez Gene ID:23460
Ensembl ID:ENSG00000154262

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 67074986 - 67136847


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100066408Full LengthBC166682ATP-binding cassette, sub-family A (ABC1), member 6
40124612IncompleteBC125231ATP-binding cassette, sub-family A (ABC1), member 6
40124613IncompleteBC125232ATP-binding cassette, sub-family A (ABC1), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_525023  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080284 NP_525023 Q8N139 ABC_tran

Related Sequences

 
mRNAGenPeptSwissProt
BC070125 AAH70125 Q8N139
BC125231 AAI25232 A4FVC6
BC125232 AAI25233 A4FVC6
BC166682 AAI66682 Q8N139
AY028898 AAK30023 Q8N139
AF373290 AAM77557 Q8N139
AK097296 BAC04994 Q8N139
AK125487 BAG54204 B3KWP2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCA6 NP_525023 R.norvegicus Abca6 303639   XP_002727881 69
M.musculus Abca6 76184 Gene Info NP_671751 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)