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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RTN4, reticulon 4
Sequence ID:NM_007008
NM_020532
NM_153828
NM_207520
NM_207521
RefSeqGene ID:NG_029037
Entrez Gene ID:57142
Ensembl ID:ENSG00000115310

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p16.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 55199328 - 55277502

 Exon Info From UCSC:
NM_007008
NM_020532
NM_153828
NM_207520
NM_207521

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862539Full LengthBC152425reticulon 4
40148210Full LengthBC150182reticulon 4
40148984Full LengthBC152555reticulon 4
100002775BC139928reticulon 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_997404  NP_997403  NP_065393  NP_722550  NP_008939  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007008 NP_008939   Reticulon
NM_020532 NP_065393 Q9NQC3 Reticulon
NM_153828 NP_722550   Reticulon
NM_207520 NP_997403   Reticulon
NM_207521 NP_997404   Reticulon

Related Sequences

 
mRNAGenPeptSwissProt
AF077050 AAD27783 Q9NQC3
AF132047 AAD31021 Q9NQC3
AF132048 AAD31022 Q9NQC3
AF125103 AAD39920 Q9NQC3
AF148537 AAG12176 Q9NQC3
AF148538 AAG12177 Q9NQC3
AF087901 AAG12205 Q9NQC3
AF177332 AAG17976 Q9NQC3
AF320999 AAG40878 Q9NQC3
AF063601 AAG43160 Q9NQC3
BC001035 AAH01035 Q9NQC3
BC007109 AAH07109 Q9NQC3
BC010737 AAH10737 Q9NQC3
BC012619 AAH12619 Q9NQC3
BC014366 AAH14366 Q9NQC3
BC016165 AAH16165 Q9NQC3
BC026788 AAH26788 Q9NQC3
BC068991 AAH68991 Q9NQC3
BC071848 AAH71848 Q6IPN0
BC139928 AAI39929  
BC150182 AAI50183 Q9NQC3
BC152425 AAI52426 Q9NQC3
BC152555 AAI52556 Q9NQC3
AF333336 AAK20831 Q9NQC3
AY102276 AAM64245 Q9NQC3
AY102277 AAM64246 Q9NQC3
AY102278 AAM64247 Q9NQC3
AY102279 AAM64248 Q9NQC3
AY123245 AAM64249 Q9NQC3
AY123246 AAM64250 Q9NQC3
AY123247 AAM64251 Q9NQC3
AY123248 AAM64252 Q9NQC3
AY123249 AAM64253 Q9NQC3
AY123250 AAM64254 Q9NQC3
DQ778739 ABG76010 A6XGP7
AB020693 BAA74909 Q9NQC3
AB015639 BAA83712 Q9NQC3
AB040462 BAB18927 Q9NQC3
AB040463 BAB18928 Q9NQC3
AB073351 BAE45714 Q3LIF4
AB073359 BAE45717 Q3LIF1
AK302741 BAG63956 B4DZ44
AJ251383 CAB99248 Q9NQC3
AJ251384 CAB99249 Q9NQC3
AJ251385 CAB99250 Q9NQC3
AM392753 CAL37631  
AM393104 CAL37982  
AM393122 CAL38000  
AM393280 CAL38158  
AM393537 CAL38414  
AM393557 CAL38434  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RTN4 NP_065393 R.norvegicus Rtn4 83765   NP_114019 78
M.musculus Rtn4 68585 Gene Info NP_918943 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)