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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. HCN3, hyperpolarization activated cyclic nucleotide-gated potassium channel 3
Sequence ID:NM_020897
NR_073074
Entrez Gene ID:57657
Ensembl ID:ENSG00000143630

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 155247568 - 155259638

NM_020897 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1286155247373155247658
287716155252201155252630
717878155253764155253925
8791097155254329155254547
10981244155254955155255101
12451485155255514155255754
14861650155256963155257127
16513717155257571155259637

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063358Full LengthBC157070hyperpolarization activated cyclic nucleotide-gated potassium channel 3
3507934IncompleteBC000066hyperpolarization activated cyclic nucleotide-gated potassium channel 3
4156701IncompleteBC028024hyperpolarization activated cyclic nucleotide-gated potassium channel 3
100061556BC156230hyperpolarization activated cyclic nucleotide-gated potassium channel 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065948  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020897 NP_065948 Q9P1Z3 cNMP_binding
Ion_trans
Ion_trans_N

Related Sequences

 
mRNAGenPeptSwissProt
BC000066 AAH00066 Q9P1Z3
BC028024 AAH28024 Q9P1Z3
BC111364 AAI11365 Q2T9L6
BC156230 AAI56231  
BC157070 AAI57071  
AF488550 AAO49470 Q86WJ5
AB040968 BAA96059 Q9P1Z3
AK299333 BAH13004 B7Z5R8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HCN3 NP_065948 R.norvegicus Hcn3 114245   NP_446137 95
M.musculus Hcn3 15168 Gene Info NP_032253 95
A.gambiae AgaP_AGAP002150 1269408   XP_308045 61
D.melanogaster Ih 36589   NP_001137668 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)