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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRSF9, serine/arginine-rich splicing factor 9
Sequence ID:NM_003769
Entrez Gene ID:8683
Ensembl ID:ENSG00000111786

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 120899702 - 120907489

NM_003769 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
43536120899471120899964
537709120901752120901924
710870120903429120903589
8711204120907224120907557

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7939816Full LengthBC093971splicing factor, arginine/serine-rich 9
7939818Full LengthBC093973splicing factor, arginine/serine-rich 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003760  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003769 NP_003760 Q13242 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
U30825 AAA93069 Q13242
BC093971 AAH93971 Q13242
BC093973 AAH93973 Q13242
AK290644 BAF83333 A8K3M9
AK294254 BAG57550 B4DFT9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRSF9 NP_003760 M.musculus Srsf9 108014 Gene Info NP_079849 99
R.norvegicus Srsf9 288701   NP_001009255 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)