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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SYDE1, synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Sequence ID:NM_033025
Entrez Gene ID:85360
Ensembl ID:ENSG00000105137

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 15223120 - 15225784

NM_033025 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11191521821315218331
1204611521986615220207
46211061522051415221158
110713211522133115221545
132214481522212315222249
144916091522244215222602
161018351522315615223381
183632541522437015225788

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5106728Full LengthBC029926synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
4139438IncompleteBC018942synapse defective 1, Rho GTPase, homolog 1 (C. elegans)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_033025 NP_149014 Q6ZW31 RhoGAP

Related Sequences

 
mRNAGenPeptSwissProt
AF209931 AAF22843 Q9UH66
BC018942 AAH18942 Q6ZW31
BC029926 AAH29926 Q6ZW31
AK023573 BAB14612 Q6ZW31
AK123686 BAC85676 Q6ZW31
AK315453 BAG37840 B2RD93

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYDE1 NP_149014 R.norvegicus Syde1 362842   XP_343174 87
M.musculus Syde1 71709 Gene Info NP_082151 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)