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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPTBN1, Spectrin, beta, non-erythrocytic 1
Sequence ID:AL542459
RefSeqGene ID:NG_029817
Entrez Gene ID:6711
Ensembl ID:ENSG00000115306

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 54895820 - 54896812


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021279Full LengthBC137282spectrin, beta, non-erythrocytic 1
9021280Full LengthBC137283spectrin, beta, non-erythrocytic 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003128 NP_003119 Q01082 PH
CH
Spectrin
NM_178313 NP_842565   CH
Spectrin

Related Sequences

 
mRNAGenPeptSwissProt
S65762 AAB28324 Q01082
BC137282 AAI37283 Q01082
BC137283 AAI37284 Q01082
AF218848 AAL56651 Q8WYB3
AF327441 AAO15362 Q01082
AB209551 BAD92788 Q59FA9
AB209748 BAD92985 Q01082
AB371586 BAG48315 B2ZZ89
AK295570 BAG58470 B4DIF8
AJ005694 CAA06678 Q01082

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPTBN1 NP_003119 M.musculus Spnb2 20742 Gene Info NP_787030 98
R.norvegicus Sptbn1 305614   NP_001013148 97
A.gambiae AgaP_AGAP010895 1271052   XP_309796 58
D.melanogaster beta-Spec 32746   NP_523388 57
C.elegans unc-70 179077   NP_001024053 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta