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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. DDX17, DEAD (Asp-Glu-Ala-Asp) box helicase 17
Sequence ID:NM_001098504
NM_006386
NM_001098505
NM_030881
RefSeqGene ID:NG_029642
Entrez Gene ID:10521
Ensembl ID:ENSG00000100201

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 38879444 - 38902301

 Exon Info From UCSC:
NM_001098504
NM_006386
NM_001098505
NM_030881

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3345982Full LengthBC000595DEAD (Asp-Glu-Ala-Asp) box polypeptide 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006377  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001098504 NP_001091974      
NM_006386 NP_006377 Q92841 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U59321 AAC50787 Q92841 EC 3.6.4.13
AF131750 AAD20033 Q9UQL5  
BC000595 AAH00595 Q92841 EC 3.6.4.13
AB209595 BAD92832 Q59F66  
AK303049 BAG64169 B4DZQ7  
CR456432 CAG30318 Q92841 EC 3.6.4.13
AL713763 CAH10627 Q92841 EC 3.6.4.13
CU012992 CAK54423    
CU013280 CAK54722    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX17 NP_006377 M.musculus Ddx17 67040 Gene Info NP_951062 99
A.thaliana AT1G55150 841958   NP_175911 62
D.melanogaster Rm62 40739   NP_524243 62
A.thaliana AT5G63120 836432   NP_974985 58
A.gambiae AgaP_AGAP004912 1275719   XP_315003 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)