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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STX17, Syntaxin 17
Sequence ID:NM_017919
Entrez Gene ID:55014
Ensembl ID:ENSG00000136874

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 102668965 - 102732623

NM_017919 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
174102668914102668987
75259102677459102677643
260325102691059102691124
326551102713341102713566
552667102722198102722313
668718102722386102722436
719805102729934102730020
8066907102730715102736816

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5768578Full LengthBC111009syntaxin 17
8069070Full LengthBC101564syntaxin 17
8069072Full LengthBC101566syntaxin 17
6620826IncompleteBC070269syntaxin 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060389  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017919 NP_060389 P56962 SNARE

Related Sequences

 
mRNAGenPeptSwissProt
BC070269 AAH70269 Q6NSC7
BC101564 AAI01565 P56962
BC101566 AAI01567 P56962
BC111009 AAI11010 Q2TAB5
AK000658 BAA91311 P56962
AK095262 BAG53017 B3KTA5
AK295949 BAG58731 B4DJ69
AL834371 CAD39034 Q8N3G0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STX17 NP_060389 M.musculus Stx17 67727 Gene Info NP_080619 93
R.norvegicus Stx17 252853   NP_663775 91
D.melanogaster Syx17 38541   NP_523926 33
A.gambiae AgaP_AGAP005684 1276361   XP_315698 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)