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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BLOC1S6, biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Sequence ID:NM_012388
RefSeqGene ID:NG_028194
Entrez Gene ID:26258
Ensembl ID:ENSG00000104164

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 45879416 - 45898724

NM_012388 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13074587941645879722
3084494588433245884473
4505374589529745895384
5386244589762545897711
62539404589859245901907

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3450397Full LengthBC004819pallidin homolog (mouse)
4839532IncompleteBC026289pallidin homolog (mouse)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012388 NP_036520 Q9UL45  

Related Sequences

 
mRNAGenPeptSwissProt
AF080470 AAF08343 Q9UL45
BC004819 AAH04819 Q9UL45
JF432566 ADZ15783  
AK315581 BAG37954 B2RDK7
AK128626 BAG54702 B3KY40

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PLDN NP_036520 M.musculus Pldn 18457 Gene Info NP_062762 87
R.norvegicus Pldn 317630   NP_001020885 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta