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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL6, ribosomal protein L6
Sequence ID:NM_000970
NM_001024662
Entrez Gene ID:6128
Ensembl ID:ENSG00000089009

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 112843027 - 112846461

 Exon Info From UCSC:
NM_000970
NM_001024662

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2823733Full LengthBC004138ribosomal protein L6
4286423Full LengthBC022444ribosomal protein L6
4333761Full LengthBC031009ribosomal protein L6
4616668Full LengthBC020679ribosomal protein L6
4994660Full LengthBC032299ribosomal protein L6
6293404Full LengthBC071912ribosomal protein L6
8143827Full LengthBC104824ribosomal protein L6
8143829Full LengthBC104826ribosomal protein L6

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000970 NP_000961 Q02878 Ribosomal_L6e
Ribosomal_L6e_N
NM_001024662 NP_001019833 Q02878 Ribosomal_L6e
Ribosomal_L6e_N

Related Sequences

 
mRNAGenPeptSwissProt
S71022 AAB30819 Q02878
AF261087 AAF99680 Q9HBB3
BC004138 AAH04138 Q02878
BC020679 AAH20679 Q02878
BC022444 AAH22444 Q8TBK5
BC031009 AAH31009 Q8N5Z7
BC032299 AAH32299 Q02878
BC071912 AAH71912 Q02878
BC104824 AAI04825 Q02878
BC104826 AAI04827 Q02878
AY320410 AAP73810 Q7Z5Z2
D17554 BAA04491 Q02878
D28388 BAA05754  
AK311863 BAG34804 B2R4K7
AK298117 BAG60400 B4DNY8
AK299470 BAG61435 B4DRX3
X69391 CAA49188 Q02878

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL6 NP_000961 M.musculus Rpl6 19988 Gene Info NP_035420 90
M.musculus Gm6136 620213 Gene Info XP_890389 89
R.norvegicus Rpl6 117042   NP_446423 89
M.musculus Gm5428 432502 Gene Info XP_483949 88
M.musculus Gm6807 627889 Gene Info XP_001480277 88
A.thaliana AT1G74060 843746   NP_177546 54
A.thaliana AT1G74050 843744   NP_177545 54
C.elegans rpl-6 176015   NP_498584 52
A.thaliana AT1G18540 838435   NP_173289 52
D.melanogaster RpL6 43723   NP_651876 49
S.cerevisiae RPL6B 851169   NP_013553 49
S.pombe rpl6 2539372   NP_588190 48
S.cerevisiae RPL6A 854902   NP_013638 47
A.gambiae AgaP_AGAP001911 1281215   XP_321154 46
N.crassa NCU02707 3881630   XP_965480 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)