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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SHROOM3, shroom family member 3
Sequence ID:NM_020859
RefSeqGene ID:NG_028077
Entrez Gene ID:57619
Ensembl ID:ENSG00000138771

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 77661174 - 77700942

 Exon Info From UCSC:
NM_020859

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3349317IncompleteBC007291shroom family member 3
100062484BC156132shroom family member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065910  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020859 NP_065910 Q8TF72 PDZ

Related Sequences

 
mRNAGenPeptSwissProt
BC007291 AAH07291 Q8TF72
BC156132 AAI56133  
AF109367 AAQ13515 Q8TF72
AB040914 BAA96005 Q8TF72
AK027744 BAB55336 Q96K23
AB055660 BAB84689 Q8TF72
AK124415 BAC85848 Q6ZVL3
AK127929 BAC87195 Q8TF72
AK128677 BAG54709 B3KY47
AK304103 BAG65006 B4E244

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SHROOM3 NP_065910 M.musculus Shroom3 27428 Gene Info NP_056571 74
R.norvegicus Shroom3 305230   NP_001094359 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)