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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. DDX42, DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
Sequence ID:NM_007372
NM_203499
Entrez Gene ID:11325
Ensembl ID:ENSG00000198231

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 61864409 - 61895758

 Exon Info From UCSC:
NM_007372
NM_203499

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3905607Full LengthBC015505DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
30407786Full LengthBC093081DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
3869206IncompleteBC008208DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
6107393IncompleteBC078667DEAD (Asp-Glu-Ala-Asp) box polypeptide 42

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_987095  NP_031398  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007372 NP_031398 Q86XP3 EC 3.6.4.13 DEAD
Helicase_C
NM_203499 NP_987095 Q86XP3 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF083255 AAC32396 Q86XP3 EC 3.6.4.13
BC008208 AAH08208 Q86XP3 EC 3.6.4.13
BC015505 AAH15505 Q86XP3 EC 3.6.4.13
BC078667 AAH78667 Q86XP3 EC 3.6.4.13
BC093081 AAH93081 Q86XP3 EC 3.6.4.13
AB036090 BAC66466 Q86XP3 EC 3.6.4.13
AK292908 BAF85597 Q86XP3 EC 3.6.4.13
AK001964 BAG50996 B3KMI4  
AK095772 BAG53126 B3KTL4  
AK122737 BAG53696 B3KV84  
AK126480 BAG54335 B3KX23  
AL050096 CAB43268 Q86XP3 EC 3.6.4.13
BK000566 DAA00077 Q86XP3 EC 3.6.4.13

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX42 NP_031398 M.musculus Ddx42 72047 Gene Info NP_082350 97
R.norvegicus Ddx42 303607   NP_001100529 96
A.gambiae AgaP_AGAP012523 1267690   XP_306246 60
C.elegans C46F11.4 175469   NP_497743 57
D.melanogaster CG6418 39218   NP_648413 56
A.thaliana AT2G47330 819346   NP_566099 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)