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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCD3, ATP-binding cassette, sub-family D (ALD), member 3
Sequence ID:NM_001122674
NM_002858
RefSeqGene ID:NG_008865
Entrez Gene ID:5825
Ensembl ID:ENSG00000117528

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 94979029 - 94984052

 Exon Info From UCSC:
NM_001122674
NM_002858

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5265201Full LengthBC068509ATP-binding cassette, sub-family D (ALD), member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002849  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001122674 NP_001116146    
NM_002858 NP_002849 P28288 ABC_tran
ABC_membrane_2

Related Sequences

 
mRNAGenPeptSwissProt
M81182 AAA60128 P28288
BC009712 AAH09712 P28288
BC068509 AAH68509 P28288
BT006644 AAP35290 P28288
AK296791 BAG59369 B4DL07
AK302714 BAG63934 B4DZ22
X58528 CAA41416 P28288

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCD3 NP_002849 M.musculus Abcd3 19299 Gene Info NP_033017 95
R.norvegicus Abcd3 25270   NP_036936 95
C.elegans pmp-2 174127   NP_495408 62
C.elegans pmp-1 174126   NP_495407 60
D.melanogaster CG12703 32992   NP_608354 60
A.gambiae AgaP_AGAP000440 1271802   XP_310656 59
A.thaliana PXA1 830144   NP_001190973 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta