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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TMEM55B, transmembrane protein 55B
Sequence ID:NM_001100814
NM_144568
Entrez Gene ID:90809
Ensembl ID:ENSG00000165782

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 20926717 - 20929771

 Exon Info From UCSC:
NM_001100814
NM_144568

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3940519Full LengthBC002867transmembrane protein 55B
4816227Full LengthBC020947transmembrane protein 55B

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001100814 NP_001094284      
NM_144568 NP_653169 Q86T03 EC 3.1.3.78  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC002867 AAH02867 Q86T03 EC 3.1.3.78
BC020947 AAH20947 Q86T03 EC 3.1.3.78
AK314021 BAG36732 Q86T03 EC 3.1.3.78
AL137727 CAB70896 Q86T03 EC 3.1.3.78
BX161490 CAD61939 Q86T03 EC 3.1.3.78
BX248025 CAD62347 Q86T03 EC 3.1.3.78
AM392745 CAL37623    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TMEM55B NP_001094284 M.musculus Tmem55b 219024 Gene Info NP_001028443 97
R.norvegicus Tmem55b 364298   NP_001014255 96
A.gambiae AgaP_AGAP006243 1276903   XP_316310 55
D.melanogaster CG6707 39168   NP_648372 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)