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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LHX2, LIM homeobox 2
Sequence ID:NM_004789
Entrez Gene ID:9355
Ensembl ID:ENSG00000106689

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q33.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 126773888 - 126795442

NM_004789 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1859126773888126774746
8601062126776239126776441
10631466126777400126777803
14671672126783377126783582
16732416126794698126795441

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7939507Full LengthBC093662LIM homeobox 2
8327653Full LengthBC112185LIM homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004780  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004789 NP_004780 P50458 Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
U11701 AAB08752 P50458
BC093662 AAH93662 P50458
BC112185 AAI12186 P50458
EU446687 ABZ92216  
AK094511 BAC04371 P50458
AK027597 BAG51357 B3KNJ5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LHX2 NP_004780 M.musculus Lhx2 16870 Gene Info NP_034840 99
R.norvegicus Lhx2 296706   NP_001100041 99
D.melanogaster ap 35509   NP_001163058 53
A.gambiae AgaP_AGAP008980 3291866   XP_552873 52
C.elegans ttx-3 181357   NP_509970 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)