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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. NOP16, NOP16 nucleolar protein homolog (yeast)
Sequence ID:NM_016391
NM_001256539
NM_001256540
Entrez Gene ID:51491
Ensembl ID:ENSG00000048162

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 175810948 - 175815928

Transcript StartTranscript EndChromosomal Start Chromosomal End
2144175811232175811374
145251175812221175812327
252321175813840175813909
322430175815235175815343
431537175815433175815539

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3534019Full LengthBC019331NOP16 nucleolar protein homolog (yeast)
5416724Full LengthBC032424NOP16 nucleolar protein homolog (yeast)
6066208Full LengthBC040106NOP16 nucleolar protein homolog (yeast)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256539 NP_001243468    
NM_001256540 NP_001243469    
NM_016391 NP_057475 Q9Y3C1  

Related Sequences

 
mRNAGenPeptSwissProt
AF151875 AAD34112 Q9Y3C1
AF161460 AAF29075 Q9Y3C1
AF151019 AAF36105 Q9P0T8
BC019331 AAH19331 Q05D05
BC032424 AAH32424 Q6PIM0
BC040106 AAH40106 Q9Y3C1
AY561704 AAS66977 Q9Y3C1
HQ257929 ADR82683  
AK300883 BAG62525 B4DV13
AK303281 BAG64360 B4E098
CR457169 CAG33450 Q9Y3C1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NOP16 NP_057475 M.musculus Nop16 28126 Gene Info NP_848720 91
R.norvegicus Nop16 306768   NP_001040560 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)