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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HMG20A, High mobility group 20A
Sequence ID:NM_018200
Entrez Gene ID:10363
Ensembl ID:ENSG00000140382

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 77775720 - 77777945

 Exon Info From UCSC:
NM_018200

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3908842Full LengthBC021959high-mobility group 20A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060670  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018200 NP_060670 Q9NP66 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
AF146222 AAF66706 Q9NP66
BC021959 AAH21959 Q9NP66
BT006716 AAP35362 Q9NP66
AK001601 BAA91782 Q9NP66
AK223100 BAD96820 Q9NP66
AK297449 BAG59873 B4DMG1
AK316281 BAH14652 B4DMG1
AL355737 CAB90816 Q9NP66

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HMG20A NP_060670 M.musculus Hmg20a 66867 Gene Info NP_080088 96
R.norvegicus Hmg20a 315689   NP_001101620 96
A.gambiae AgaP_AGAP004791 1278434   XP_318023 38
A.gambiae AgaP_AGAP004789 5667224   XP_001689081 38
D.melanogaster CG9418 37407   NP_611553 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)