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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL13A1, collagen, type XIII, alpha 1
Sequence ID:NM_001130103
NM_080798
NM_080800
NM_080801
NM_080802
NM_080805
NM_005203
NM_080799
NM_080803
NM_080804
NM_080806
NM_080807
NM_080808
NM_080809
NM_080810
NM_080811
NM_080812
NM_080813
NM_080814
NM_080815
Entrez Gene ID:1305
Ensembl ID:ENSG00000197467

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 71561687 - 71718799

 Exon Info From UCSC:
NM_001130103
NM_080798
NM_080800
NM_080801
NM_080802
NM_080805

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020372Full LengthBC136385collagen, type XIII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542990  NP_542991  NP_542992  NP_542988  NP_542995  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130103 NP_001123575 Q5TAT6  
NM_080798 NP_542988   Collagen
NM_080800 NP_542990   Collagen
NM_080801 NP_542991   Collagen
NM_080802 NP_542992   Collagen
NM_080805 NP_542995   Collagen

Related Sequences

 
mRNAGenPeptSwissProt
M59217 AAA51685 Q5TAT6
M33653 AAA52047 Q5TAT6
M15524 AAA52048 Q5TAT6
BC136385 AAI36386 Q5TAT6
AJ293624 CAC00688 Q5TAT6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL13A1 NP_001123575 M.musculus Col13a1 12817 Gene Info NP_031757 85
R.norvegicus Col13a1 499431   NP_001102642 84
C.elegans col-99 185112   NP_499869 50
D.melanogaster CG42342 7354466   NP_001189234 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)