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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CSTB, Cystatin B (stefin B)
Sequence ID:NM_000100
RefSeqGene ID:NG_011545
Entrez Gene ID:1476
Ensembl ID:ENSG00000160213

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 45194082 - 45196173

NM_000100 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
183974519383145194210
3984994519453845194639
5006744519608445196258

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900656Full LengthBC003370cystatin B (stefin B)
3453675Full LengthBC010532cystatin B (stefin B)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000091  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000100 NP_000091 P04080
Q76LA1
Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
L03558 AAA35727 P04080
Q76LA1
BC003370 AAH03370 P04080
Q76LA1
BC010532 AAH10532 P04080
Q76LA1
BT007040 AAP35689 P04080
Q76LA1
DQ890923 ABM81849  
DQ894073 ABM84999  
AK312133 BAG35069 Q76LA1
CR542148 CAG46945 P04080
Q76LA1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSTB NP_000091 M.musculus Cstb 13014 Gene Info NP_031819 79
R.norvegicus Cstb 25308   NP_036970 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)