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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GKN1, gastrokine 1
Sequence ID:NM_019617
Entrez Gene ID:56287
Ensembl ID:ENSG00000169605

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 69201704 - 69208106

NM_019617 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11176920170469201820
1181716920462669204679
1723096920476869204905
3104206920600269206112
4215686920704469207191
5698196920786069208110

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5188291IncompleteBC059778gastrokine 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062563  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019617 NP_062563 Q9NS71
Q53YU7
BRICHOS

Related Sequences

 
mRNAGenPeptSwissProt
BC059778 AAH59778 Q9NS71
Q53YU7
AY139184 AAN75449 Q9NS71
Q53YU7
AY359050 AAQ89409 Q9NS71
Q53YU7
AY456961 AAR21211 Q9NS71
Q53YU7
HQ448092 ADQ32573  
AB039886 BAA92433 Q9NS71
AL833013 CAH56295 Q658S4
AJ966789 CAI85015 Q9NS71
Q53YU7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GKN1 NP_062563 M.musculus Gkn1 66283 Gene Info NP_079742 65
R.norvegicus Gkn1 297418   NP_945323 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)