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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SIX4, SIX homeobox 4
Sequence ID:NM_017420
RefSeqGene ID:NG_021182
Entrez Gene ID:51804
Ensembl ID:ENSG00000100625

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 61179884 - 61189883

NM_017420 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
346686117625561180920
466953546118647761187162
535562776118992961190851

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40007526Full LengthBC101934SIX homeobox 4
40007527Full LengthBC098135SIX homeobox 4
40007529Full LengthBC098282SIX homeobox 4
40007530Full LengthBC099722SIX homeobox 4

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017420 NP_059116 Q9UIU6 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF032107 AAF04403 Q9UL97
BC098135 AAH98135 Q9UIU6
BC098282 AAH98282 Q9UIU6
BC099722 AAH99722 Q9UIU6
BC101934 AAI01935 Q9UIU6
EU446619 ABZ92148  
EU446844 ABZ92373  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SIX4 NP_059116 M.musculus Six4 20474 Gene Info NP_035512 91
R.norvegicus Six4 299138   NP_001100209 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)