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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRSF6, serine/arginine-rich splicing factor 6
Sequence ID:NM_006275
NR_034009
RefSeqGene ID:NG_029906
Entrez Gene ID:6431
Ensembl ID:ENSG00000124193

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q12-q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 42086544 - 42090416

NM_006275 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12774208650342086779
2784264208700042087148
4275514208841042088534
5527604208867242088880
7618444208915442089237
84537444208934242092241

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3449841Full LengthBC006832splicing factor, arginine/serine-rich 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006266  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006275 NP_006266 Q13247 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
U30828 AAA93071 Q13247
U30883 AAA93073 Q13247
BC006832 AAH06832 Q13247
AB208976 BAD92213 Q59GY3
AK291203 BAF83892 A8K588
AB451251 BAG70065 B5BU15
AB451375 BAG70189 B5BU15
AK300411 BAH13279 Q13247

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRSF6 NP_006266 M.musculus Srsf6 67996 Gene Info NP_080775 98
R.norvegicus Srsf6 362264   NP_001014207 97
D.melanogaster B52 41670   NP_788666 66
A.gambiae AgaP_AGAP004592 1275942   XP_315232 65
C.elegans rsp-1 174748   NP_496442 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)