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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRSF1, serine/arginine-rich splicing factor 1
Sequence ID:NM_001078166
NM_006924
NR_034041
Entrez Gene ID:6426
Ensembl ID:ENSG00000136450

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 56080853 - 56084588

 Exon Info From UCSC:
NM_001078166
NM_006924

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900101Full LengthBC010264splicing factor, arginine/serine-rich 1
5166554Full LengthBC033785splicing factor, arginine/serine-rich 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008855  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001078166 NP_001071634    
NM_006924 NP_008855 Q07955 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
M69040 AAA03476 Q07955
M72709 AAA35564 Q07955
M72709 AAA35565 Q07955
BC010264 AAH10264 Q07955
BC033785 AAH33785 Q07955
AB062124 BAB93456 Q07955
AB209558 BAD92795 Q59FA2
AK289933 BAF82622 A8K1L8
AK312781 BAG35644 Q07955
AK298527 BAH12806 B7Z570

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRSF1 NP_008855 M.musculus Srsf1 110809 Gene Info NP_775550 100
R.norvegicus Srsf1 689890   NP_001103022 100
D.melanogaster SF2 53443   NP_652611 69
C.elegans rsp-3 176688   NP_499649 67
A.gambiae AgaP_AGAP010496 1275237   XP_314469 66
A.thaliana AT4G02430 828027   NP_567235 66
A.thaliana SR1 839262   NP_850933 65
P.falciparum PFE0865c 812988   XP_001351730 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)