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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COPB2, coatomer protein complex, subunit beta 2 (beta prime)
Sequence ID:NM_004766
NR_023350
Entrez Gene ID:9276
Ensembl ID:ENSG00000184432

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 139098866 - 139108488

 Exon Info From UCSC:
NM_004766

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821998Full LengthBC000326coatomer protein complex, subunit beta 2 (beta prime)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004757  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004766 NP_004757 P35606 WD40
Coatomer_WDAD

Related Sequences

 
mRNAGenPeptSwissProt
BC000326 AAH00326 P35606
JF432305 ADZ15522  
AK302943 BAG64100 B4DZI8
AK304219 BAG65091 B4E2C9
X70476 CAA49900 P35606

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COPB2 NP_004757 M.musculus Copb2 50797 Gene Info NP_056642 98
A.gambiae AgaP_AGAP004798 1278426   XP_318012 69
D.melanogaster beta'Cop 45757   NP_524836 69
C.elegans F38E11.5 177779   NP_501671 67
A.thaliana AT1G79990 844339   NP_001154478 62
A.thaliana AT1G52360 841666   NP_175645 61
A.thaliana AT3G15980 820842   NP_001189908 57
N.crassa NCU07319 3878625   XP_962477 53
S.cerevisiae SEC27 852740   NP_011378 48
S.pombe sec27 2540050   NP_596811 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)