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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HDAC6, histone deacetylase 6
Sequence ID:NM_006044
RefSeqGene ID:NG_012560
Entrez Gene ID:10013
Ensembl ID:ENSG00000094631

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 48660507 - 48683380

 Exon Info From UCSC:
NM_006044

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2984860Full LengthBC013737histone deacetylase 6
6584427Full LengthBC069243histone deacetylase 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006035  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_006044 NP_006035 Q9UBN7 EC 3.5.1.98 Hist_deacetyl
zf-UBP

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF132609 AAD29048 Q9UBN7 EC 3.5.1.98
AF174499 AAF36540 Q9NZS3  
BC005872 AAH05872 Q9BRX7  
BC011498 AAH11498 Q9BRX7  
BC013737 AAH13737 Q7L3E5  
BC069243 AAH69243 Q6NT75  
BT006649 AAP35295 Q9BRX7  
JF432329 ADZ15546    
AB020708 BAA74924 Q9UBN7 EC 3.5.1.98
AK001543 BAG50935 B3KMC3  
AK024083 BAG51263 B3KNA1  
AK095124 BAG52988 B3KT76  
AK122954 BAG53817 B3KVK5  
AK131286 BAG54760 B3KY98  
AK295884 BAG58680 B4DJ18  
AK302926 BAG64088 B4DZH6  
AK303012 BAG64143 B4DZN1  
AJ011972 CAA09893 Q9UBN7 EC 3.5.1.98
AL137696 CAB70878 Q9NSW6  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HDAC6 NP_006035 M.musculus Hdac6 15185 Gene Info NP_001123888 79
R.norvegicus Hdac6 84581   XP_228753 79
A.gambiae AgaP_AGAP000532 1271709   XP_310554 46
D.melanogaster HDAC6 32461   NP_727842 46
C.elegans F41H10.6 177316   NP_500787 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta