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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SGCZ, sarcoglycan, zeta
Sequence ID:NM_139167
RefSeqGene ID:NG_008899
Entrez Gene ID:137868
Ensembl ID:ENSG00000185053

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 13947372 - 14412435

NM_139167 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
27741394737313948145
7758981395988413960007
8999711396567113965743
97210941402208814022210
109511821409510014095187
118312841418161114181712
128514791441224014412434
148021781509509315095791

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40114834Full LengthBC125037sarcoglycan zeta
7262220IncompleteBC069459sarcoglycan zeta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_631906  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139167 NP_631906 Q96LD1 Sarcoglycan_1

Related Sequences

 
mRNAGenPeptSwissProt
BC069459 AAH69459 Q96LD1
BC125037 AAI25038 Q08AT0
AY028700 AAK21962 Q96LD1
AY502063 AAR89453 Q96LD1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SGCZ NP_631906 R.norvegicus Sgcz 364605   NP_001102345 96
M.musculus Sgcz 244431 Gene Info NP_665840 95
C.elegans sgn-1 184162   NP_495867 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)