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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RDH8, retinol dehydrogenase 8 (all-trans)
Sequence ID:NM_015725
Entrez Gene ID:50700
Ensembl ID:ENSG00000080511

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 10123924 - 10132954

NM_015725 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13521012392410124275
3535111012773210127890
5126911012940610129585
6927851013138410131477
7869691013193010132113
97017131013220910132952

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100014981Full LengthBC146479retinol dehydrogenase 8 (all-trans)
100014308BC140328retinol dehydrogenase 8 (all-trans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056540  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_015725 NP_056540 Q9NYR8 EC 1.1.1.300 adh_short

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF229845 AAF63160 Q9NYR8 EC 1.1.1.300
BC140328 AAI40329    
BC146479 AAI46480    
AK024022 BAB14782 Q9NYR8 EC 1.1.1.300

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RDH8 NP_056540 R.norvegicus Rdh8 690953   NP_001162065 84
M.musculus Rdh8 235033 Gene Info NP_001025461 83
S.pombe SPCC162.03 2539382   NP_588241 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)