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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HOXA1, homeobox A1
Sequence ID:NM_005522
NM_153620
RefSeqGene ID:NG_011813
Entrez Gene ID:3198
Ensembl ID:ENSG00000105991

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ATHABASKAN BRAINSTEMDYSGENESIS SYNDROME 

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p15.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 27133398 - 27135572

 Exon Info From UCSC:
NM_005522
NM_153620

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5537563Full LengthBC032547homeobox A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005513  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005522 NP_005513 P49639 Homeobox
NM_153620 NP_705873    

Related Sequences

 
mRNAGenPeptSwissProt
U10421 AAA86954 P49639
S79910 AAB35423 P49639
S79869 AAB35424 P49639
S79871 AAB35425 P49639
U37431 AAC50248 P49639
U37431 AAC50249 P49639
U37431 AAC50250 P49639
BC032547 AAH32547 P49639
DQ890884 ABM81810  
DQ894038 ABM84964  
AK313514 BAG36294 P49639

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HOXA1 NP_005513 M.musculus Hoxa1 15394 Gene Info NP_034579 94
R.norvegicus Hoxa1 25607   NP_037207 94
C.elegans ceh-13 176069   NP_498655 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)