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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDH20, cadherin 20, type 2
Sequence ID:NM_031891
Entrez Gene ID:28316
Ensembl ID:ENSG00000101542

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18q21.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 59157774 - 59222365

 Exon Info From UCSC:
NM_031891

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40007940Full LengthBC101047cadherin 20, type 2
40007941Full LengthBC101048cadherin 20, type 2
40007942Full LengthBC101049cadherin 20, type 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_114097  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_031891 NP_114097 Q9HBT6 Cadherin
Cadherin_C

Related Sequences

 
mRNAGenPeptSwissProt
AF217289 AAG23739 Q9HBT6
BC101047 AAI01048 Q9HBT6
BC101048 AAI01049 Q9HBT6
BC101049 AAI01050 Q9HBT6
AK094366 BAC04340 Q8N9J3
AK290190 BAF82879 A8K2C5
AK313809 BAG36545 B2R9J8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDH20 NP_114097 M.musculus Cdh20 23836 Gene Info NP_035930 96
R.norvegicus Cdh20 363948   NP_001012766 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)