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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TMC1, Transmembrane channel-like 1
Sequence ID:NM_138691
RefSeqGene ID:NG_008213
Entrez Gene ID:117531
Ensembl ID:ENSG00000165091

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
DEAFNESS, AUTOSOMAL RECESSIVE 7 
DEAFNESS, AUTOSOMALDOMINANT 36 

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q21.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 75136716 - 75451267

 Exon Info From UCSC:
NM_138691

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069217Full LengthBC172523transmembrane channel-like 1
40001409IncompleteBC114380transmembrane channel-like 1
40011715IncompleteBC103955transmembrane channel-like 1
40011718IncompleteBC103956transmembrane channel-like 1
40011719IncompleteBC141860transmembrane channel-like 1
100063243BC156561transmembrane channel-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_619636  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_138691 NP_619636 Q8TDI8 TMC

Related Sequences

 
mRNAGenPeptSwissProt
BC103955 AAI03956 A4FU59
BC103956 AAI03957 Q3MI88
BC114380 AAI14381 A4FUA6
BC141860 AAI41861 A5D8Y1
BC156561 AAI56562  
BC172523 AAI72523  
AF417578 AAL86399 Q8TDI8
AK098607 BAC05351 Q8TDI8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TMC1 NP_619636 R.norvegicus Tmc1 361739   NP_001101991 98
M.musculus Tmc1 13409 Gene Info NP_083229 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)