Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LMX1A, LIM homeobox transcription factor 1, alpha
Sequence ID:NM_001033507
NM_177399
NM_001174069
NM_177398
Entrez Gene ID:4009
Ensembl ID:ENSG00000162761

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 165171109 - 165325475

 Exon Info From UCSC:
NM_001174069
NM_177398

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063998Full LengthBC160062LIM homeobox transcription factor 1, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_796372  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001174069 NP_001167540    
NM_177398 NP_796372 Q8TE12 Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
BC066353 AAH66353 Q6NZ39
BC119743 AAI19744 Q8TE12
BC119744 AAI19745 Q8TE12
BC160062 AAI60062  
JF432394 ADZ15611  
AK127724 BAG54558 Q8TE12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LMX1A NP_001167540 R.norvegicus Lmx1a 289201   NP_001099437 97
M.musculus Lmx1a 110648 Gene Info NP_387501 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)