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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDC1, syndecan 1
Sequence ID:NM_001006946
NM_002997
Entrez Gene ID:6382
Ensembl ID:ENSG00000115884

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 20401773 - 20424891

 Exon Info From UCSC:
NM_001006946
NM_002997

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3347793Full LengthBC008765syndecan 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001006946 NP_001006947 P18827 Syndecan
NM_002997 NP_002988 P18827 Syndecan

Related Sequences

 
mRNAGenPeptSwissProt
J05392 AAA60605 P18827
BC008765 AAH08765 P18827
DQ893265 ABM84191  
DQ896595 ABM87594  
AK222739 BAD96459 Q53H42
AK299385 BAG61371 B4DRQ9
X60306 CAA42851 P18827
AJ551176 CAD80245 P18827

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDC1 NP_001006947 R.norvegicus Sdc1 25216   NP_037158 78
M.musculus Sdc1 20969 Gene Info NP_035649 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)