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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. KRT78, keratin 78
Sequence ID:NM_173352
RefSeqGene ID:NG_012297
Entrez Gene ID:196374
Ensembl ID:ENSG00000170423

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 53232749 - 53242778

NM_173352 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
84185323274553233155
4194535323323653233270
4546745323354753233767
6758005323787653238001
8019655323834253238506
96610615323998053240075
106211225324054753240607
112313375324169053241904
133817855324233053242777

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100014573BC141554keratin 78

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775487  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173352 NP_775487 Q8N1N4 Filament

Related Sequences

 
mRNAGenPeptSwissProt
BC141554 AAI41555  
AK096419 BAC04782 Q8N1N4
AK290901 BAF83590 Q8N1N4
AK298636 BAG60811 B4DQ49
BX647095 CAI46001 Q8N1N4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KRT78 NP_775487 R.norvegicus Krt78 315324   XP_002729895 70
M.musculus Krt78 332131 Gene Info NP_997652 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)