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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GRIK1, glutamate receptor, ionotropic, kainate 1
Sequence ID:NM_000830
NM_175611
Entrez Gene ID:2897
Ensembl ID:ENSG00000171189

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 30909525 - 31311943

 Exon Info From UCSC:
NM_000830
NM_175611

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062820Full LengthBC156975glutamate receptor, ionotropic, kainate 1
5244103IncompleteBC028238glutamate receptor, ionotropic, kainate 1
100015997BC152727glutamate receptor, ionotropic, kainate 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000821  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000830 NP_000821 P39086 Lig_chan
ANF_receptor
NM_175611 NP_783300    

Related Sequences

 
mRNAGenPeptSwissProt
L19058 AAA52568 P39086
U16125 AAA95961 P39086
BC152727 AAI52728  
BC156975 AAI56976  
AK294353 BAH11742 B7Z256
AK296404 BAH12343 B7Z3V7
AJ249208 CAC80546 P39086

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GRIK1 NP_000821 M.musculus Grik1 14805 Gene Info NP_034478 97
R.norvegicus Grik1 29559   NP_058937 97
D.melanogaster CG3822 42473   NP_650925 51
A.gambiae AgaP_AGAP000801 4576020   XP_311341 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)