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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SSX2, Synovial sarcoma, X breakpoint 2
Sequence ID:NM_003147
NM_175698
Entrez Gene ID:6757
Ensembl ID:ENSG00000241476

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 52726519 - 52729628

 Exon Info From UCSC:
NM_003147
NM_175698

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3615133Full LengthBC007343synovial sarcoma, X breakpoint 2
3636268Full LengthBC002818synovial sarcoma, X breakpoint 2
3916128Full LengthBC016957synovial sarcoma, X breakpoint 2
4641362Full LengthBC071827synovial sarcoma, X breakpoint 2
7262129Full LengthBC069313synovial sarcoma, X breakpoint 2
40003337Full LengthBC103863synovial sarcoma, X breakpoint 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003147 NP_003138    
NM_175698 NP_783629 Q16385  

Related Sequences

 
mRNAGenPeptSwissProt
S79332 AAB35379 Q16385
AF190791 AAF44724 Q9NZK4
BC002818 AAH02818 Q16385
BC007343 AAH07343 Q16385
BC016957 AAH16957 Q16385
BC069313 AAH69313 Q16385
BC071827 AAH71827 Q16385
BC103863 AAI03864 Q16385
EU446707 ABZ92236  
X86175 CAA60111 Q16385
AM393802 CAL38677  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SSX2 NP_783629 H.sapiens SSX2B 727837   NP_001157889 100
M.musculus Ssxb8 631002   NP_001075034 45
M.musculus Ssxb9 387131   NP_951021 43
M.musculus Gm5751 436188 Gene Info XP_488314 43
M.musculus Ssx9 382206 Gene Info NP_951018 42
R.norvegicus Ssx1 691903   XP_001080044 42
M.musculus Ssxb3 278174 Gene Info NP_942601 41
M.musculus Gm14459 546263 Gene Info NP_001119963 41
M.musculus Gm6797 627853   XP_897650 40
M.musculus Ssxb1 67985 Gene Info NP_080768 39
M.musculus Ssxb10 385312   NP_951019 39
M.musculus Ssxb5 387586 Gene Info NP_955023 39
M.musculus Gm6592 625480 Gene Info NP_001075033 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)