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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL23A1, collagen, type XXIII, alpha 1
Sequence ID:NM_173465
Entrez Gene ID:91522
Ensembl ID:ENSG00000050767

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 177664620 - 177677105

 Exon Info From UCSC:
NM_173465

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5165083Full LengthBC042428collagen, type XXIII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775736  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173465 NP_775736 Q86Y22 Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC042428 AAH42428 Q86Y22
AY158895 AAO18361 Q86Y22
AY898961 AAX84028 Q86Y22
AL137461 CAB70749 Q86Y22

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL23A1 NP_775736 M.musculus Col23a1 237759 Gene Info NP_700442 91
R.norvegicus Col23a1 353303   NP_853667 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)