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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCA1, ATP-binding cassette, sub-family A (ABC1), member 1
Sequence ID:NM_005502
RefSeqGene ID:NG_007981
Entrez Gene ID:19
Ensembl ID:ENSG00000165029

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CORONARY ARTERY DISEASE IN FAMILIAL HYPERCHOLESTEROLEMIA, PROTECTION AGAINSTAPOA2
EPHX2
GHR
GHR
GHR
ITIH4
LDLR
LDLR
PPP1R17
HDL DEFICIENCY, TYPE 2APOA1
TANGIER DISEASE 

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 107646798 - 107666047

 Exon Info From UCSC:
NM_005502

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9056784Full LengthBC146856ATP-binding cassette, sub-family A (ABC1), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005493  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005502 NP_005493 O95477 ABC_tran

Related Sequences

 
mRNAGenPeptSwissProt
AF165281 AAD49849 O95477
AF258627 AAF69513 Q9NP93
AF285167 AAF98175 O95477
BC146856 AAI46857 B2RUU2
AB037924 BAB07875 Q9NS76
AB055982 BAB63210 O95477
AB208839 BAD92076 Q59HC0
AB445477 BAH10664 B7XCW9
AJ012376 CAA10005 O95477

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCA1 NP_005493 M.musculus Abca1 11303 Gene Info NP_038482 95
R.norvegicus Abca1 313210   NP_835196 94
A.thaliana ABCA1 818768   NP_850354 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta