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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HOXC9, homeobox C9
Sequence ID:NM_006897
Entrez Gene ID:3225
Ensembl ID:ENSG00000180806

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 54393954 - 54397120

NM_006897 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16345439387654394509
63515395439621354397117

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6144625Full LengthBC053894homeobox C9
3877189IncompleteBC032769homeobox C9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008828  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006897 NP_008828 P31274 Homeobox
Hox9_act

Related Sequences

 
mRNAGenPeptSwissProt
BC032769 AAH32769 Q8N561
BC053894 AAH53894 P31274
HQ448082 ADQ32563  
AK315194 BAG37634 P31274
X99682 CAA67998 O15222

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)