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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ONECUT1, one cut homeobox 1
Sequence ID:NM_004498
NR_073510
Entrez Gene ID:3175
Ensembl ID:ENSG00000169856

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 53049422 - 53082176

NM_004498 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16925304935253050043
69319255308097653082208

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021698Full LengthBC140830one cut homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004489  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004498 NP_004489 Q9UBC0 Homeobox
CUT

Related Sequences

 
mRNAGenPeptSwissProt
U77975 AAB61705 Q9UBC0
U96173 AAD00826 Q9UBC0
BC140830 AAI40831 Q9UBC0
EU532019 ACB30402 B2CNW3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ONECUT1 NP_004489 R.norvegicus Onecut1 25231   NP_073162 99
M.musculus Onecut1 15379 Gene Info NP_032288 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)