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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LCP1, lymphocyte cytosolic protein 1 (L-plastin)
Sequence ID:NM_002298
Entrez Gene ID:3936
Ensembl ID:ENSG00000136167

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cervix, colon, endocrine, eye, fetus, gastrointestinal tract, heart, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, spleen, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q14.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:Unknown

 Exon Info From UCSC:
NM_002298

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900752Full LengthBC010271lymphocyte cytosolic protein 1 (L-plastin)
3143290Full LengthBC007673lymphocyte cytosolic protein 1 (L-plastin)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002298 NP_002289 P13796 efhand
CH

Related Sequences

 
mRNAGenPeptSwissProt
M34426 AAA36184 P13796
J02923 AAA63236 P13796
M22300 AAB02845 P13796
BC007673 AAH07673 P13796
BC010271 AAH10271 P13796
DQ892935 ABM83861  
DQ896184 ABM87183  
AB208984 BAD92221 Q59GX5
AK223305 BAD97025 Q53FI1
AK312393 BAG35310 P13796
AK097275 BAG53443 B3KUI1
AK300556 BAG62262 B4DUA0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LCP1 NP_002289 M.musculus Lcp1 18826 Gene Info NP_032905 97
R.norvegicus Lcp1 306071   NP_001012044 96
C.elegans plst-1 3564941   NP_500061 60
C.elegans Y73B3B.1 190640   NP_508051 57
D.melanogaster Fim 32721   NP_523385 55
A.gambiae AgaP_AGAP004071 1270874   XP_309626 55
S.pombe fim1 2539765   NP_596289 44
N.crassa NCU03992 3872724   XP_956577 44
S.cerevisiae SAC6 851707   NP_010414 42
A.thaliana FIM1 828777   NP_001031726 40
A.thaliana AT5G55400 835633   NP_200351 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)