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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RRH, retinal pigment epithelium-derived rhodopsin homolog
Sequence ID:NM_006583
Entrez Gene ID:10692
Ensembl ID:ENSG00000180245

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 110659947 - 110765663

NM_006583 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1140110749149110749288
141331110754294110754484
332431110756521110756620
432585110757162110757315
586754110758592110758760
755933110763624110763802
9341554110765238110765858

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40112275Full LengthBC128120retinal pigment epithelium-derived rhodopsin homolog
40112276Full LengthBC128121retinal pigment epithelium-derived rhodopsin homolog
40112297Full LengthBC128401retinal pigment epithelium-derived rhodopsin homolog

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006574  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006583 NP_006574 O14718 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
AF012270 AAC51757 O14718
BC128120 AAI28121 O14718
BC128121 AAI28122 O14718
BC128401 AAI28402 O14718

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RRH NP_006574 M.musculus Rrh 20132 Gene Info NP_033128 80
R.norvegicus Rrh 310869   NP_001101196 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)