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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CSGALNACT2, chondroitin sulfate N-acetylgalactosaminyltransferase 2
Sequence ID:NM_018590
Entrez Gene ID:55454
Ensembl ID:ENSG00000169826

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 43633969 - 43680749

NM_018590 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1824363393343634014
839964365034443651257
99712134365416243654378
121413154365594143656042
131614944365931343659491
149515894366245143662545
159016714367139843671479
167237214367869743680746

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5223190Full LengthBC030268chondroitin sulfate N-acetylgalactosaminyltransferase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061060  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_018590 NP_061060 Q8N6G5 EC 2.4.1.174 CHGN

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF116646 AAF71068 Q8N6G5 EC 2.4.1.174
BC030268 AAH30268 Q8N6G5 EC 2.4.1.174
DQ891469 ABM82395    
DQ894653 ABM85579    
AK074474 BAB85092 Q8N6G5 EC 2.4.1.174
AB079252 BAC55935 Q8N6G5 EC 2.4.1.174
AB090811 BAC55936 Q8N6G5 EC 2.4.1.174
AK125300 BAG54179 Q8N6G5 EC 2.4.1.174
BX640967 CAE45982 Q8N6G5 EC 2.4.1.174
BX641073 CAE46036 Q8N6G5 EC 2.4.1.174

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSGALNACT2 NP_061060 R.norvegicus Csgalnact2 297554   NP_001100086 94
M.musculus Csgalnact2 78752 Gene Info NP_084441 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)