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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. JPH1, junctophilin 1
Sequence ID:NM_020647
Entrez Gene ID:56704
Ensembl ID:ENSG00000104369

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 75146941 - 75147980

NM_020647 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
323327514694075149269
233324287514944275149537
242930757515676375157409
307631947517161975171737
319539547522709575227854
395543737523314375233561

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021743Full LengthBC140875junctophilin 1
9021744Full LengthBC140876junctophilin 1
4830621IncompleteBC049372junctophilin 1
40025923IncompleteBC098314junctophilin 1
40025925IncompleteBC098299junctophilin 1
40025926IncompleteBC099736junctophilin 1
40025927IncompleteBC114464junctophilin 1
40025928IncompleteBC113856junctophilin 1
40025929IncompleteBC139832junctophilin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065698  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020647 NP_065698 Q9HDC5 MORN

Related Sequences

 
mRNAGenPeptSwissProt
BC049372 AAH49372 Q86VR1
BC098299 AAH98299 Q4KMX3
BC113856 AAI13857 Q4KMX3
BC114464 AAI14465 Q4KMX3
BC139832 AAI39833 Q4KMX3
BC140875 AAI40876 Q9HDC5
BC140876 AAI40877 Q9HDC5
BX537756 CAD97825 Q7Z682
CR627477 CAH10677 Q6AHW6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens JPH1 NP_065698 M.musculus Jph1 57339 Gene Info NP_065629 94
R.norvegicus Jph1 297748   NP_001100100 94
D.melanogaster jp 34274   NP_001188757 44
A.thaliana AT1G21920 838794   NP_173610 38
A.thaliana AT1G77660 844102   NP_177889 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)