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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. SDCBP2, syndecan binding protein (syntenin) 2
Sequence ID:NM_001199784
RefSeqGene ID:NG_029926
Entrez Gene ID:27111
Ensembl ID:ENSG00000125775

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 1290620 - 1294283

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3633262Full LengthBC002727syndecan binding protein (syntenin) 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_536737  NP_056500  

Protein Infomation

NM_001199784 NP_001186713    
NM_015685 NP_056500   PDZ
NM_080489 NP_536737 Q9H190 PDZ

Related Sequences

AF131809 AAD20049 Q9H190
AF159228 AAF80369 Q9H190
BC002727 AAH02727 Q9H190
AK296577 BAG59197 B4DKI5
AJ292245 CAC21573 Q9H190
AJ292244 CAC21716 Q9H190

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens SDCBP2 NP_001186713 R.norvegicus Sdcbp2 311532   NP_001020863 80
M.musculus Sdcbp2 228765 Gene Info NP_663510 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)