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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OBSCN, Obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
Sequence ID:NM_001271223
NM_001098623
NM_052843
RefSeqGene ID:NG_032122
Entrez Gene ID:84033
Ensembl ID:ENSG00000154358

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 228468473 - 228492160

 Exon Info From UCSC:
NM_001098623
NM_052843

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_443075  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001098623 NP_001092093 Q5VST9 EC 2.7.11.1  
NM_001271223 NP_001258152      
NM_052843 NP_443075     fn3
ig
PH
IQ
RhoGEF
C1-set
I-set
V-set
C2-set_2

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC098118 AAH98118 Q4KMX9  
BC098262 AAH98262 Q4KMX9  
BC098292 AAH98292 Q4KMX9  
BC099731 AAH99731 Q4KMX9  
BC114382 AAI14383 Q4KMX9  
BC114461 AAI14462 Q24JT4  
DQ400343 ABD63255 A9NIU4  
AB046776 BAB13382 Q5VST9 EC 2.7.11.1
AB046859 BAB13465 Q5VST9 EC 2.7.11.1
AJ002535 CAC44768 Q5VST9 EC 2.7.11.1
AL833724 CAH56259 Q658N7  
AM231061 CAJ76912 Q5VST9 EC 2.7.11.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OBSCN NP_001092093 R.norvegicus Obscn 338458   XP_340808 73
M.musculus Obscn 380698 Gene Info NP_001164983 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)