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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNTN5, contactin 5
Sequence ID:NM_001243270
NM_001243271
NM_014361
NM_175566
Entrez Gene ID:53942
Ensembl ID:ENSG00000149972

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 99426872 - 100227473

 Exon Info From UCSC:
NM_014361
NM_175566

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5273769Full LengthBC039255contactin 5
9052705Full LengthBC144185contactin 5
9052706Full LengthBC144186contactin 5
40146650Full LengthBC130619contactin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780775  NP_055176  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001243270 NP_001230199    
NM_001243271 NP_001230200    
NM_014361 NP_055176 O94779 fn3
ig
I-set
NM_175566 NP_780775   fn3
ig
I-set
V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC039255 AAH39255 Q49AF3
BC130619 AAI30620 O94779
BC144185 AAI44186 O94779
BC144186 AAI44187 B7ZM08
AB013802 BAA36579 O94779
AB013803 BAA36580 O94779
AK294692 BAG57851 B4DGP0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNTN5 NP_055176 M.musculus Cntn5 244682 Gene Info NP_001164258 91
R.norvegicus Cntn5 114589   NP_446198 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)