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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. POLR2J3, polymerase (RNA) II (DNA directed) polypeptide J3
Sequence ID:NM_001097615
NM_001015884
Entrez Gene ID:548644
Ensembl ID:ENSG00000168255

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 102208031 - 102213014

Transcript StartTranscript EndChromosomal Start Chromosomal End
1607102178365102178971
608728102180052102180172
729805102180461102180537
8061016102181539102181749
10171178102181947102182108
11791265102207443102207529
12661440102208456102208630
14411530102210281102210370
15311680102212918102213067

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062567Full LengthBC156863polymerase (RNA) II (DNA directed) polypeptide J3
6503634IncompleteBC056864RPB11b2 protein

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001079877 NP_001073346    
NM_001097615 NP_001091084 Q9GZM3  
NM_006989 NP_008920 O43374 C2
PH
RasGAP
BTK
NM_032959 NP_116581   RNA_pol_L

Related Sequences

 
mRNAGenPeptSwissProt
BC086857 AAH86857 Q9GZM3
BC110873 AAI10874 Q2NL74
BC113663 AAI13664 O43374
BC143584 AAI43585 B7ZL55
BC156863 AAI56864  
AF468111 AAL87672 Q8TDE6
HQ258652 ADR83403  
AB011110 BAA25464 O43374
AB209398 BAD92635 Q59FR2
AK302370 BAG63692 B4DYD0
AK315928 BAH14299 B7Z9G3
AJ277739 CAC18329 Q9GZM3
AJ277740 CAC18330 Q9GZM3
AJ277741 CAC18331 Q9H1A7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens POLR2J3 NP_001091084 H.sapiens POLR2J2 246721 Gene Info NP_116581 99
S.cerevisiae RPB11 854157   NP_014638 53
S.pombe rpb11 2543112   NP_593333 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)