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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OPN1SW, opsin 1 (cone pigments), short-wave-sensitive
Sequence ID:NM_001708
RefSeqGene ID:NG_009094
Entrez Gene ID:611
Ensembl ID:ENSG00000128617

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
COLORBLINDNESS, TRITAN 

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q32.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 128412593 - 128415844

NM_001708 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19187128412544128412712
188427128413702128413941
428593128414551128414716
594762128415039128415207
7631114128415492128415843

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062210Full LengthBC156719opsin 1 (cone pigments), short-wave-sensitive

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001699  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001708 NP_001699 P03999 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
M26172 AAA35608 P03999
BC156719 AAI56720  
DQ822478 ABH01259 Q0PJU0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OPN1SW NP_001699 R.norvegicus Opn1sw 81644   NP_112277 87
M.musculus Opn1sw 12057 Gene Info NP_031564 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)